Reconstruction and clustering with graph optimization and priors on gene networks and images

The discovery of novel gene regulatory processes improves the understanding of cell phenotypic responses to external stimuli for many biological applications, such as medicine, environment or biotechnologies. To this purpose, transcriptomic data are generated and analyzed from DNA microarrays or more recently RNAseq experiments. They consist in genetic expression level sequences obtained for all genes of a studied organism placed in different living conditions. From these data, gene regulation mechanisms can be recovered by revealing topological links encoded in graphs. In regulatory graphs, nodes correspond to genes. A link between two nodes is identified if a regulation relationship exists between the two corresponding genes. Such networks are called Gene Regulatory Networks (GRNs). Their construction as well as their analysis remain challenging despite the large number of available inference methods. In this thesis, we propose to address this network inference problem ...

Pirayre, Aurélie — IFP Energies nouvelles


Self-Organization and Data Compression in Wireless Sensor Networks of Extreme Scales: Application to Environmental Monitoring, Climatology and Bioengineering

Wireless Sensor Networks (WSNs) aim for accurate data gathering and representation of one or multiple physical variables from the environment, by means of sensor reading and wireless data packets transmission to a Data Fusion Center (DFC). There is no comprehensive common set of requirements for all WSN, as they are application dependent. Moreover, due to specific node capabilities or energy consumption constraints several tradeoffs have to be considered during the design, and particularly, the price of the sensor nodes is a determining factor. The distinction between small and large scale WSNs does not only refers to the quantity of sensor nodes, but also establishes the main design challenges in each case. For example, the node organization is a key issue in large scale WSNs, where many inexpensive nodes have to properly work in a coordinated manner. Regarding the amount of ...

Chidean, Mihaela I. — Rey Juan Carlos University


Distributed Localization and Tracking of Acoustic Sources

Localization, separation and tracking of acoustic sources are ancient challenges that lots of animals and human beings are doing intuitively and sometimes with an impressive accuracy. Artificial methods have been developed for various applications and conditions. The majority of those methods are centralized, meaning that all signals are processed together to produce the estimation results. The concept of distributed sensor networks is becoming more realistic as technology advances in the fields of nano-technology, micro electro-mechanic systems (MEMS) and communication. A distributed sensor network comprises scattered nodes which are autonomous, self-powered modules consisting of sensors, actuators and communication capabilities. A variety of layout and connectivity graphs are usually used. Distributed sensor networks have a broad range of applications, which can be categorized in ecology, military, environment monitoring, medical, security and surveillance. In this dissertation we develop algorithms for distributed sensor networks ...

Dorfan, Yuval — Bar Ilan University


Perceptually-Based Signal Features for Environmental Sound Classification

This thesis faces the problem of automatically classifying environmental sounds, i.e., any non-speech or non-music sounds that can be found in the environment. Broadly speaking, two main processes are needed to perform such classification: the signal feature extraction so as to compose representative sound patterns and the machine learning technique that performs the classification of such patterns. The main focus of this research is put on the former, studying relevant signal features that optimally represent the sound characteristics since, according to several references, it is a key issue to attain a robust recognition. This type of audio signals holds many differences with speech or music signals, thus specific features should be determined and adapted to their own characteristics. In this sense, new signal features, inspired by the human auditory system and the human perception of sound, are proposed to improve ...

Valero, Xavier — La Salle-Universitat Ramon Llull


Energy-Efficient Target Tracking of Mobile Targets through Wireless Sensor Networks - Cross-layer Design and Optimization

In recent years, advances in signal processing have led the wireless sensor networks to be capable of mobility. The signal processing in a wireless sensor network differs from that of a traditional wireless network mainly in two important aspects. Unlike traditional wireless networks, in a sensor network the signal processing is performed in a fully distributed manner as the sensor measurements in a distributed fashion across the network collected. Additionally, due to the limited onboard resource of a sensor network it is essential to develop energy and bandwidth efficient signal processing algorithms. The thesis is devoted to discuss the state of the arte of algorithms commonly known as tracking algorithms. Although tracking algorithms have only been attracting research and development attention recently, already a wide literature and great variety of proposed approaches regarding the topic exist. The dissertation focus on ...

Arienzo, Loredana — University of Salerno


Reduced-Complexity Code Synchronization in Multipath Channels for BOC Modulated CDMA Signals with Applications in Galileo and Modernized GPS Systems

Applications for the new generations of Global Navigation Satellite Systems (GNSS) are developing rapidly and attract a great interest. Both US Global Positioning System (GPS) and European Galileo signals use Direct Sequence-Code Division Multiple Access (DS-CDMA) technology, where code and frequency synchronization are important stages at the receiver. The GNSS receivers estimate jointly the code phase and the Doppler spread through a two-dimensional searching process in time-frequency plane. Since both GPS and Galileo systems will send several signals on the same carriers, a new modulation type - the Binary Offset Carrier (BOC) modulation, has been selected. The main target of this modulation is to provide a better spectral separation with the existing BPSK-modulated GPS signals, while allowing optimal usage of the available bandwidth for different GNSS signals. The BOC modulation family includes several BOC variants, such as sine BOC (SinBOC), ...

Burian, Adina — Universitat Trier


A COMPARISON OF DIFFERENT APPROACHES TO TARGET DIFFERENTIATION WITH SONAR

This study compares the performances of different classification schemes and fusion techniques for target differentiation and localization of commonly encountered features in indoor robot environments using sonar sensing. Differentiation of such features is of interest for intelligent systems in a variety of applications such as system control based on acoustic signal detection and identification, map-building, navigation, obstacle avoidance, and target tracking. The classification schemes employed include the target differentiation algorithm developed by Ayrulu and Barshan, statistical pattern recognition techniques, fuzzy c-means clustering algorithm, and artificial neural networks. The fusion techniques used are Dempster-Shafer evidential reasoning and different voting schemes. To solve the consistency problem arising in simple majority voting, different voting schemes including preference ordering and reliability measures are proposed and verified experimentally. To improve the performance of neural network classifiers, different input signal representations, two different training algorithms, and ...

Ayrulu-Erdem, Birsel — Bilkent University


Decentralized Estimation Under Communication Constraints

In this thesis, we consider the problem of decentralized estimation under communication constraints in the context of Collaborative Signal and Information Processing. Motivated by sensor network applications, a high volume of data collected at distinct locations and possibly in diverse modalities together with the spatially distributed nature and the resource limitations of the underlying system are of concern. Designing processing schemes which match the constraints imposed by the system while providing a reasonable accuracy has been a major challenge in which we are particularly interested in the tradeoff between the estimation performance and the utilization of communications subject to energy and bandwidth constraints. One remarkable approach for decentralized inference in sensor networks is to exploit graphical models together with message passing algorithms. In this framework, after the so-called information graph of the problem is constructed, it is mapped onto the ...

Uney, Murat — Middle East Technical University


Audio-visual processing and content management techniques, for the study of (human) bioacoustics phenomena

The present doctoral thesis aims towards the development of new long-term, multi-channel, audio-visual processing techniques for the analysis of bioacoustics phenomena. The effort is focused on the study of the physiology of the gastrointestinal system, aiming at the support of medical research for the discovery of gastrointestinal motility patterns and the diagnosis of functional disorders. The term "processing" in this case is quite broad, incorporating the procedures of signal processing, content description, manipulation and analysis, that are applied to all the recorded bioacoustics signals, the auxiliary audio-visual surveillance information (for the monitoring of experiments and the subjects' status), and the extracted audio-video sequences describing the abdominal sound-field alterations. The thesis outline is as follows. The main objective of the thesis, which is the technological support of medical research, is presented in the first chapter. A quick problem definition is initially ...

Dimoulas, Charalampos — Department of Electrical and Computer Engineering, Faculty of Engineering, Aristotle University of Thessaloniki, Thessaloniki, Greece


Filter Bank Techniques for the Physical Layer in Wireless Communications

Filter bank based multicarrier is an evolution with many advantages over the widespread OFDM multicarrier scheme. The author of the thesis stands behind this statement and proposes various solutions for practical physical layer problems based on filter bank processing of wireless communications signals. Filter banks are an evolved form of subband processing, harnessing the key advantages of original efficient subband processing based on the fast Fourier transforms and addressing some of its shortcomings, at the price of a somewhat increased implementation complexity. The main asset of the filter banks is the possibility to design very frequency selective subband filters to compartmentalize the overall spectrum into well isolated subbands, while still making very efficient use of the assigned bandwidth. This thesis first exploits this main feature of the filter banks in the subband system configuration, in which the analysis filter bank ...

Hidalgo Stitz, Tobias — Tampere University of Technology


Advanced Signal Processing Concepts for Multi-Dimensional Communication Systems

The widespread use of mobile internet and smart applications has led to an explosive growth in mobile data traffic. With the rise of smart homes, smart buildings, and smart cities, this demand is ever growing since future communication systems will require the integration of multiple networks serving diverse sectors, domains and applications, such as multimedia, virtual or augmented reality, machine-to-machine (M2M) communication / the Internet of things (IoT), automotive applications, and many more. Therefore, in the future, the communication systems will not only be required to provide Gbps wireless connectivity but also fulfill other requirements such as low latency and massive machine type connectivity while ensuring the quality of service. Without significant technological advances to increase the system capacity, the existing telecommunications infrastructure will be unable to support these multi-dimensional requirements. This poses an important demand for suitable waveforms with ...

Cheema, Sher Ali — Technische Universität Ilmenau


Bayesian Compressed Sensing using Alpha-Stable Distributions

During the last decades, information is being gathered and processed at an explosive rate. This fact gives rise to a very important issue, that is, how to effectively and precisely describe the information content of a given source signal or an ensemble of source signals, such that it can be stored, processed or transmitted by taking into consideration the limitations and capabilities of the several digital devices. One of the fundamental principles of signal processing for decades is the Nyquist-Shannon sampling theorem, which states that the minimum number of samples needed to reconstruct a signal without error is dictated by its bandwidth. However, there are many cases in our everyday life in which sampling at the Nyquist rate results in too many data and thus, demanding an increased processing power, as well as storage requirements. A mathematical theory that emerged ...

Tzagkarakis, George — University of Crete


Location and map awareness technologies in next wireless networks

In a future perspective, the need of mapping an unknown indoor environment, of localizing and retrieving information from objects with zero costs and efforts could be satisfied by the adoption of next 5G technologies. Thanks to the mix of mmW and massive arrays technologies, it will be possible to achieve a higher indoor localization accuracy without relying on a dedicated infrastructure for localization but exploiting that designed for communication purposes. Besides users’ localization and navigation objectives, mapping and thus, the capability of reconstructing indoor scenarios, will be an important field of research with the possibility of sharing environmental information via crowd-sourcing mechanisms between users. Finally, in the Internet of Things vision, it is expected that people, objects and devices will be interconnected to each other with the possibility of exchanging the acquired and estimated data including those regarding objects identification, ...

Guerra, Anna — University of Bologna


Distributed Signal Processing Algorithms for Acoustic Sensor Networks

In recent years, there has been a proliferation of wireless devices for individual use to the point of being ubiquitous. Recent trends have been incorporating many of these devices (or nodes) together, which acquire signals and work in unison over wireless channels, in order to accomplish a predefined task. This type of cooperative sensing and communication between devices form the basis of a so-called wireless sensor network (WSN). Due to the ever increasing processing power of these nodes, WSNs are being assigned more complicated and computationally demanding tasks. Recent research has started to exploit this increased processing power in order for the WSNs to perform tasks pertaining to audio signal acquisition and processing forming so-called wireless acoustic sensor networks (WASNs). Audio signal processing poses new and unique problems when compared to traditional sensing applications as the signals observed often have ...

Szurley, Joseph — KU Leuven


Signal processing algorithms for wireless acoustic sensor networks

Recent academic developments have initiated a paradigm shift in the way spatial sensor data can be acquired. Traditional localized and regularly arranged sensor arrays are replaced by sensor nodes that are randomly distributed over the entire spatial field, and which communicate with each other or with a master node through wireless communication links. Together, these nodes form a so-called ‘wireless sensor network’ (WSN). Each node of a WSN has a local sensor array and a signal processing unit to perform computations on the acquired data. The advantage of WSNs compared to traditional (wired) sensor arrays, is that many more sensors can be used that physically cover the full spatial field, which typically yields more variety (and thus more information) in the signals. It is likely that future data acquisition, control and physical monitoring, will heavily rely on this type of ...

Bertrand, Alexander — Katholieke Universiteit Leuven

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