Methods for Comparative Analysis of Metagenomic Data (2018)
Robust Network Topology Inference and Processing of Graph Signals
The abundance of large and heterogeneous systems is rendering contemporary data more pervasive, intricate, and with a non-regular structure. With classical techniques facing troubles to deal with the irregular (non-Euclidean) domain where the signals are defined, a popular approach at the heart of graph signal processing (GSP) is to: (i) represent the underlying support via a graph and (ii) exploit the topology of this graph to process the signals at hand. In addition to the irregular structure of the signals, another critical limitation is that the observed data is prone to the presence of perturbations, which, in the context of GSP, may affect not only the observed signals but also the topology of the supporting graph. Ignoring the presence of perturbations, along with the couplings between the errors in the signal and the errors in their support, can drastically hinder ...
Rey, Samuel — King Juan Carlos University
GRAPH-TIME SIGNAL PROCESSING: FILTERING AND SAMPLING STRATEGIES
The necessity to process signals living in non-Euclidean domains, such as signals de- fined on the top of a graph, has led to the extension of signal processing techniques to the graph setting. Among different approaches, graph signal processing distinguishes it- self by providing a Fourier analysis of these signals. Analogously to the Fourier transform for time and image signals, the graph Fourier transform decomposes the graph signals in terms of the harmonics provided by the underlying topology. For instance, a graph signal characterized by a slow variation between adjacent nodes has a low frequency content. Along with the graph Fourier transform, graph filters are the key tool to alter the graph frequency content of a graph signal. This thesis focuses on graph filters that are performed distributively in the node domain–that is, each node needs to exchange in- formation ...
Elvin Isufi — Delft University of Technology
Reconstruction and clustering with graph optimization and priors on gene networks and images
The discovery of novel gene regulatory processes improves the understanding of cell phenotypic responses to external stimuli for many biological applications, such as medicine, environment or biotechnologies. To this purpose, transcriptomic data are generated and analyzed from DNA microarrays or more recently RNAseq experiments. They consist in genetic expression level sequences obtained for all genes of a studied organism placed in different living conditions. From these data, gene regulation mechanisms can be recovered by revealing topological links encoded in graphs. In regulatory graphs, nodes correspond to genes. A link between two nodes is identified if a regulation relationship exists between the two corresponding genes. Such networks are called Gene Regulatory Networks (GRNs). Their construction as well as their analysis remain challenging despite the large number of available inference methods. In this thesis, we propose to address this network inference problem ...
Pirayre, Aurélie — IFP Energies nouvelles
Wireless Sensor Networks (WSNs) aim for accurate data gathering and representation of one or multiple physical variables from the environment, by means of sensor reading and wireless data packets transmission to a Data Fusion Center (DFC). There is no comprehensive common set of requirements for all WSN, as they are application dependent. Moreover, due to specific node capabilities or energy consumption constraints several tradeoffs have to be considered during the design, and particularly, the price of the sensor nodes is a determining factor. The distinction between small and large scale WSNs does not only refers to the quantity of sensor nodes, but also establishes the main design challenges in each case. For example, the node organization is a key issue in large scale WSNs, where many inexpensive nodes have to properly work in a coordinated manner. Regarding the amount of ...
Chidean, Mihaela I. — Rey Juan Carlos University
Perceptually-Based Signal Features for Environmental Sound Classification
This thesis faces the problem of automatically classifying environmental sounds, i.e., any non-speech or non-music sounds that can be found in the environment. Broadly speaking, two main processes are needed to perform such classification: the signal feature extraction so as to compose representative sound patterns and the machine learning technique that performs the classification of such patterns. The main focus of this research is put on the former, studying relevant signal features that optimally represent the sound characteristics since, according to several references, it is a key issue to attain a robust recognition. This type of audio signals holds many differences with speech or music signals, thus specific features should be determined and adapted to their own characteristics. In this sense, new signal features, inspired by the human auditory system and the human perception of sound, are proposed to improve ...
Valero, Xavier — La Salle-Universitat Ramon Llull
Applications for the new generations of Global Navigation Satellite Systems (GNSS) are developing rapidly and attract a great interest. Both US Global Positioning System (GPS) and European Galileo signals use Direct Sequence-Code Division Multiple Access (DS-CDMA) technology, where code and frequency synchronization are important stages at the receiver. The GNSS receivers estimate jointly the code phase and the Doppler spread through a two-dimensional searching process in time-frequency plane. Since both GPS and Galileo systems will send several signals on the same carriers, a new modulation type - the Binary Offset Carrier (BOC) modulation, has been selected. The main target of this modulation is to provide a better spectral separation with the existing BPSK-modulated GPS signals, while allowing optimal usage of the available bandwidth for different GNSS signals. The BOC modulation family includes several BOC variants, such as sine BOC (SinBOC), ...
Burian, Adina — Universitat Trier
Preterm birth is a major pediatric health problem that perturbs the genetically determined program of corticogenesis of the developing brain. As a consequence, prematurity has been strongly associated with adverse long-term neurodevelopmental outcome that may persist even into adulthood. Early characterization of the underlying neuronal mechanisms and early identification of infants at risk is of paramount importance since it allows better development of early therapeutic interventions aiming to prevent adverse outcomes through resilience. This dissertation aims to investigate the consequences of preterm birth on brain function and structure and their relation to adverse neurodevelopmental outcome, as well as to unveil the effect of an early music intervention on brain function. Research to date has mainly focused on the effect of early interventions on the long-term outcome but not on the effect of those interventions on brain function in preterm populations. ...
Loukas, Serafeim — Swiss Federal Institute of Technology Lausanne (EPFL)
Filter Bank Techniques for the Physical Layer in Wireless Communications
Filter bank based multicarrier is an evolution with many advantages over the widespread OFDM multicarrier scheme. The author of the thesis stands behind this statement and proposes various solutions for practical physical layer problems based on filter bank processing of wireless communications signals. Filter banks are an evolved form of subband processing, harnessing the key advantages of original efficient subband processing based on the fast Fourier transforms and addressing some of its shortcomings, at the price of a somewhat increased implementation complexity. The main asset of the filter banks is the possibility to design very frequency selective subband filters to compartmentalize the overall spectrum into well isolated subbands, while still making very efficient use of the assigned bandwidth. This thesis first exploits this main feature of the filter banks in the subband system configuration, in which the analysis filter bank ...
Hidalgo Stitz, Tobias — Tampere University of Technology
Distributed Localization and Tracking of Acoustic Sources
Localization, separation and tracking of acoustic sources are ancient challenges that lots of animals and human beings are doing intuitively and sometimes with an impressive accuracy. Artificial methods have been developed for various applications and conditions. The majority of those methods are centralized, meaning that all signals are processed together to produce the estimation results. The concept of distributed sensor networks is becoming more realistic as technology advances in the fields of nano-technology, micro electro-mechanic systems (MEMS) and communication. A distributed sensor network comprises scattered nodes which are autonomous, self-powered modules consisting of sensors, actuators and communication capabilities. A variety of layout and connectivity graphs are usually used. Distributed sensor networks have a broad range of applications, which can be categorized in ecology, military, environment monitoring, medical, security and surveillance. In this dissertation we develop algorithms for distributed sensor networks ...
Dorfan, Yuval — Bar Ilan University
The present doctoral thesis aims towards the development of new long-term, multi-channel, audio-visual processing techniques for the analysis of bioacoustics phenomena. The effort is focused on the study of the physiology of the gastrointestinal system, aiming at the support of medical research for the discovery of gastrointestinal motility patterns and the diagnosis of functional disorders. The term "processing" in this case is quite broad, incorporating the procedures of signal processing, content description, manipulation and analysis, that are applied to all the recorded bioacoustics signals, the auxiliary audio-visual surveillance information (for the monitoring of experiments and the subjects' status), and the extracted audio-video sequences describing the abdominal sound-field alterations. The thesis outline is as follows. The main objective of the thesis, which is the technological support of medical research, is presented in the first chapter. A quick problem definition is initially ...
Dimoulas, Charalampos — Department of Electrical and Computer Engineering, Faculty of Engineering, Aristotle University of Thessaloniki, Thessaloniki, Greece
Adaptive Nonlocal Signal Restoration and Enhancement Techniques for High-Dimensional Data
The large number of practical applications involving digital images has motivated a significant interest towards restoration solutions that improve the visual quality of the data under the presence of various acquisition and compression artifacts. Digital images are the results of an acquisition process based on the measurement of a physical quantity of interest incident upon an imaging sensor over a specified period of time. The quantity of interest depends on the targeted imaging application. Common imaging sensors measure the number of photons impinging over a dense grid of photodetectors in order to produce an image similar to what is perceived by the human visual system. Different applications focus on the part of the electromagnetic spectrum not visible by the human visual system, and thus require different sensing technologies to form the image. In all cases, even with the advance of ...
Maggioni, Matteo — Tampere University of Technology
Sparse Modeling Heuristics for Parameter Estimation - Applications in Statistical Signal Processing
This thesis examines sparse statistical modeling on a range of applications in audio modeling, audio localizations, DNA sequencing, and spectroscopy. In the examined cases, the resulting estimation problems are computationally cumbersome, both as one often suffers from a lack of model order knowledge for this form of problems, but also due to the high dimensionality of the parameter spaces, which typically also yield optimization problems with numerous local minima. In this thesis, these problems are treated using sparse modeling heuristics, with the resulting criteria being solved using convex relaxations, inspired from disciplined convex programming ideas, to maintain tractability. The contributions to audio modeling and estimation focus on the estimation of the fundamental frequency of harmonically related sinusoidal signals, which is commonly used model for, e.g., voiced speech or tonal audio. We examine both the problems of estimating multiple audio sources ...
Adalbjörnsson, Stefan Ingi — Lund University
Novel Signal Processing Techniques For The Exploitation Of Thermal Hyperspectral Data
THIS doctoral thesis attemps to propose a novel signal processing chain, aimed to exploit data acquired by long wave infrared (LWIR) hyperspectral sensors. In the LWIR, infrared radiation from an object is directly related to its temperature, i.e. hotter the surface, higher the emitted thermal energy. Hyperspectral sensors capture the radiated energy from the objects (target) in a large number of consecutive spectral bands within the LWIR, e.g. with the aid of a prism, in order to estimate the spectrum(spectral emissivity) and the temperature of the surface material. In this framework, two main challenging tasks affect the development and the deployment of thermal hyperspectral sensors: - atmospheric correction: the process of estimate and compensate the thermal radiation produced by the atmosphere, that affects the thermal radiation procuded by the target. This process is made more complicated by the complex combination ...
Moscadelli, Matteo — University of Pisa
In recent years, advances in signal processing have led the wireless sensor networks to be capable of mobility. The signal processing in a wireless sensor network differs from that of a traditional wireless network mainly in two important aspects. Unlike traditional wireless networks, in a sensor network the signal processing is performed in a fully distributed manner as the sensor measurements in a distributed fashion across the network collected. Additionally, due to the limited onboard resource of a sensor network it is essential to develop energy and bandwidth efficient signal processing algorithms. The thesis is devoted to discuss the state of the arte of algorithms commonly known as tracking algorithms. Although tracking algorithms have only been attracting research and development attention recently, already a wide literature and great variety of proposed approaches regarding the topic exist. The dissertation focus on ...
Arienzo, Loredana — University of Salerno
SPACE-TIME PARAMETRIC APPROACH TO EXTENDED AUDIO REALITY (SP-EAR)
The term extended reality refers to all possible interactions between real and virtual (computed generated) elements and environments. The extended reality field is rapidly growing, primarily through augmented and virtual reality applications. The former allows users to bring digital elements into the real world, while the latter lets us experience and interact with an entirely virtual environment. While currently extended reality implementations primarily focus on the visual domain, we cannot underestimate the impact of auditory perception in order to provide a fully immersive experience. As a matter of fact, effective handling of the acoustic content is able to enrich the engagement of users. We refer to Extended Audio Reality (EAR) as the subset of extended reality operations related to the audio domain. In this thesis, we propose a parametric approach to EAR conceived in order to provide an effective and ...
Pezzoli Mirco — Politecnico di Milano
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