Improving data-driven EEG-FMRI analyses for the study of cognitive functioning

Understanding the cognitive processes that are going on in the human brain, requires the combination of several types of observations. For this reason, since several years, neuroscience research started to focus on multimodal approaches. One such multimodal approach is the combination of electroencephalography (EEG) and functional magnetic resonance imaging (fMRI). The non-invasive character of these two modalities makes their combination not only harmless and painless, but also especially suited for widespread research in both clinical and experimental applications. Moreover, the complementarity between the high temporal resolution of the EEG and the high spatial resolution of the fMRI, allows obtaining a more complete picture of the processes under study. However, the combination of EEG and fMRI is challenging, not only on the level of the data acquisition, but also when it comes to extracting the activity of interest and interpreting the ...

Vanderperren, Katrien — KU Leuven


Tensor-based blind source separation for structured EEG-fMRI data fusion

A complex physical system like the human brain can only be comprehended by the use of a combination of various medical imaging techniques, each of which shed light on only a specific aspect of the neural processes that take place beneath the skull. Electroencephalography (EEG) and functional magnetic resonance (fMRI) are two such modalities, which enable the study of brain (dys)function. While the EEG is measured with a limited set of scalp electrodes which record rapid electrical changes resulting from neural activity, fMRI offers a superior spatial resolution at the expense of only picking up slow fluctuations of oxygen concentration that takes place near active brain cells. Hence, combining these very complementary modalities is an appealing, but complicated task due to their heterogeneous nature. In this thesis, we devise advanced signal processing techniques which integrate the multimodal data stemming from ...

Van Eyndhoven, Simon — KU Leuven


Learning from structured EEG and fMRI data supporting the diagnosis of epilepsy

Epilepsy is a neurological condition that manifests in epileptic seizures as a result of an abnormal, synchronous activity of a large group of neurons. Depending on the affected brain regions, seizures produce various severe clinical symptoms. Epilepsy cannot be cured and in many cases is not controlled by medication either. Surgical resection of the region responsible for generating the epileptic seizures might offer remedy for these patients. Electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) measure the changes of brain activity in time over different locations of the brain. As such, they provide valuable information on the nature, the timing and the spatial origin of the epileptic activity. Unfortunately, both techniques record activity of different brain and artefact sources as well. Hence, EEG and fMRI signals are characterised by low signal to noise ratio. Data quality and the vast amount ...

Hunyadi, Borbála — KU Leuven


Functional Neuroimaging Data Characterisation Via Tensor Representations

The growing interest in neuroimaging technologies generates a massive amount of biomedical data that exhibit high dimensionality. Tensor-based analysis of brain imaging data has by now been recognized as an effective approach exploiting its inherent multi-way nature. In particular, the advantages of tensorial over matrix-based methods have previously been demonstrated in the context of functional magnetic resonance imaging (fMRI) source localization; the identification of the regions of the brain which are activated at specific time instances. However, such methods can also become ineffective in realistic challenging scenarios, involving, e.g., strong noise and/or significant overlap among the activated regions. Moreover, they commonly rely on the assumption of an underlying multilinear model generating the data. In the first part of this thesis, we aimed at investigating the possible gains from exploiting the 3-dimensional nature of the brain images, through a higher-order tensorization ...

Christos Chatzichristos — National and Kapodistrian University of Athens


Blind Source Separation of functional dynamic MRI signals via Dictionary Learning

Magnetic Resonance Imaging (MRI) constitutes a non-invasive medical imaging technique that allows the exploration of the inner anatomy, tissues, and physiological processes of the body. Among the different MRI applications, functional Magnetic Resonance Imaging (fMRI) has slowly become an essential tool for investigating the brain behavior and, nowadays, it plays a fundamental role in clinical and neurophysiological research. Due to its particular nature, specialized signal processing techniques are required in order to analyze the fMRI data properly. Among the various related techniques that have been developed over the years, the General Linear Model (GLM) is one of the most widely used approaches, and it usually appears as a default in many specialized software toolboxes for fMRI. On the other end, Blind Source Separation (BSS) methods constitute the most common alternative to GLM, especially when no prior information regarding the brain ...

Morante, Manuel — National and Kapodistrian University of Athens


Central and peripheral mechanisms: a multimodal approach to understanding and restoring human motor control

All human actions involve motor control. Even the simplest movement requires the coordinated recruitment of many muscles, orchestrated by neuronal circuits in the brain and the spinal cord. As a consequence, lesions affecting the central nervous system, such as stroke, can lead to a wide range of motor impairments. While a certain degree of recovery can often be achieved by harnessing the plasticity of the motor hierarchy, patients typically struggle to regain full motor control. In this context, technology-assisted interventions offer the prospect of intense, controllable and quantifiable motor training. Yet, clinical outcomes remain comparable to conventional approaches, suggesting the need for a paradigm shift towards customized knowledge-driven treatments to fully exploit their potential. In this thesis, we argue that a detailed understanding of healthy and impaired motor pathways can foster the development of therapies optimally engaging plasticity. To this ...

Kinany, Nawal — Ecole Polytechnique Fédérale de Lausanne (EPFL)


Analysis of electrophysiological measurements during stress monitoring

Work-related musculoskeletal disorders are a growing problem in todays society. These musculoskeletal disorders are caused by, amongst others, repetitive movements and mental stress. Stress is defined as the mismatch between a perceived demand and the perceived capacities to meet this demand. Although stress has a subjective origin, several physiological manifestations (e.g. cardiovascular and muscular) occur during periods of perceived stress. New insight and algorithms to extract information, related to stress are beneficial. Therefore, two series of stress experiments are executed in a laboratory environment, where subjects underwent different tasks inducing physical strain, mental stress and a combination of both. In this manuscript, new and modified algorithms for electromyography signals are presented that improve the individual analysis of electromyography signals. A first algorithm removes the interference of the electrical activity of the heart on singlechannel electromyography measurements. This interference signal is ...

Taelman, Joachim — KU Leuven


Machine Learning For Data-Driven Signal Separation and Interference Mitigation in Radio-Frequency Communications

Single-channel source separation for radio-frequency (RF) systems is a challenging problem relevant to key applications, including wireless communications, radar, and spectrum monitoring. This thesis addresses the challenge by focusing on data-driven approaches for source separation, leveraging datasets of sample realizations when source models are not explicitly provided. To this end, deep learning techniques are employed as function approximations for source separation, with models trained using available data. Two problem abstractions are studied as benchmarks for our proposed deep-learning approaches. Through a simplified problem involving Orthogonal Frequency Division Multiplexing (OFDM), we reveal the limitations of existing deep learning solutions and suggest modifications that account for the signal modality for improved performance. Further, we study the impact of time shifts on the formulation of an optimal estimator for cyclostationary Gaussian time series, serving as a performance lower bound for evaluating data-driven methods. ...

Lee, Cheng Feng Gary — Massachusetts Institute of Technology


Localisation of Brain Functions: Stimuling Brain Activity and Source Reconstruction for Classification

A key issue in understanding how the brain functions is the ability to correlate functional information with anatomical localisation. Functional information can be provided by a variety of techniques like positron emission tomography (PET), functional MRI (fMRI), electroencephalography (EEG), magnetoencephalography (MEG) or transcranial magnetic stimulation (TMS). All these methods provide different, but complementary, information about the functional areas of the brain. PET and fMRI provide spatially accurate picture of brain regions involved in a given task. TMS permits to infer the contribution of the stimulated brain area to the task under investigation. EEG and MEG, which reflects brain activity directly, have temporal accuracy of the order of a millisecond. TMS, EEG and MEG are offset by their low spatial resolution. In this thesis, we propose two methods to improve the spatial accuracy of method based on TMS and EEG. The ...

Noirhomme, Quentin — Katholieke Universiteit Leuven


Automated quantification of preterm brain maturation using electroencephalography

Around 10 percent of all human births is premature, which means that annually about 15 million babies are born before 37 completed weeks of gestation. About one third of the admissions to the Neonatal Intensive Care Unit (NICU) consists of this patient group. Due to complications, 1 million babies die from premature delivery, and it is therefore the most important cause of neonatal death. In general, premature and immature babies have a high risk for neurological abnormalities by maturation in extra-uterine life. Even though improved health care has increased the survival changes of these neonates, they are sensitive to brain damage and consequently, neurocognitive disabilities. Nowadays, critical information about the brain development can be extracted from the electroencephalography (EEG). Clinical experts visually assess evolving EEG characteristics over both short and long periods to evaluate maturation of patients at risk and, ...

Koolen, Ninah — KU Leuven


Domain-informed signal processing with application to analysis of human brain functional MRI data

Standard signal processing techniques are implicitly based on the assumption that the signal lies on a regular, homogeneous domain. In practice, however, many signals lie on an irregular or inhomogeneous domain. An application area where data are naturally defined on an irregular or inhomogeneous domain is human brain neuroimaging. The goal in neuroimaging is to map the structure and function of the brain using imaging techniques. In particular, functional magnetic resonance imaging (fMRI) is a technique that is conventionally used in non-invasive probing of human brain function. This doctoral dissertation deals with the development of signal processing schemes that adapt to the domain of the signal. It consists of four papers that in different ways deal with exploiting knowledge of the signal domain to enhance the processing of signals. In each paper, special focus is given to the analysis of ...

Behjat, Hamid — Lund University


Development of an automated neonatal EEG seizure monitor

Brain function requires a continuous flow of oxygen and glucose. An insufficient supply for a few minutes during the first period of life may have severe consequences or even result in death. This happens in one to six infants per 1000 live term births. Therefore, there is a high need for a method which can enable bedside brain monitoring to identify those neonates at risk and be able to start the treatment in time. The most important currently available technology to continuously monitor brain function is electroEncephaloGraphy (or EEG). Unfortunately, visual EEG analysis requires particular skills which are not always present round the clock in the Neonatal Intensive Care Unit (NICU). Even if those skills are available it is laborsome to manually analyse many hours of EEG. The lack of time and skill are the main reasons why EEG is ...

Deburchgraeve, Wouter — KU Leuven


Miniaturization effects and node placement for neural decoding in EEG sensor networks

Electroencephalography (EEG) is a non-invasive neurorecording technique, which has the potential to be used for 24/7 neuromonitoring in daily life, e.g., in the context of neural prostheses, brain-computer interfaces, or for improved diagnosis of brain disorders. Although existing mobile wireless EEG headsets are a useful tool for short-term experiments, they are still too heavy, bulky and obtrusive, for long-term EEG-monitoring in daily life. However, we are now witnessing a wave of new miniature EEG sensor devices containing small electrodes embedded in them, which we refer to as Mini-EEGs. Mini-EEGs ideally consist of a wireless node with a small scalp area footprint, in which the electrodes, amplifier and wireless radio are embedded. However, due to their miniaturization, these mini-EEGs have the drawback that only a few EEG channels can be recorded within a small area. The latter also implies that the ...

Mundanad Narayanan, Abhijith — KU Leuven


Cochlear implant artifact suppression in EEG measurements

Cochlear implants (CIs) aim to restore hearing in severely to profoundly deaf adults, children and infants. Electrically evoked auditory steady-state responses (EASSRs) are neural responses to continuous modulated pulse trains, and can be objectively detected at the modulation frequency in the electro-encephalogram (EEG). EASSRs provide a number of advantages over other objective measures, because frequency-specific stimuli are used, because targeted brain areas can be studied, depending on the chosen stimulation parameters, and because they can objectively be detected using statistical methods. EASSRs can potentially be used to determine appropriate stimulation levels during CI fitting, without behavioral input from the subjects. Furthermore, speech understanding in noise varies greatly between CI subjects. EASSRs lend themselves well to study the underlying causes of this variability, such as the integrity of the electrode-neuron interface or changes in the auditory cortex following deafness and following ...

Deprez, Hanne — KU Leuven


Flexible Multi-Microphone Acquisition and Processing of Spatial Sound Using Parametric Sound Field Representations

This thesis deals with the efficient and flexible acquisition and processing of spatial sound using multiple microphones. In spatial sound acquisition and processing, we use multiple microphones to capture the sound of multiple sources being simultaneously active at a rever- berant recording side and process the sound depending on the application at the application side. Typical applications include source extraction, immersive spatial sound reproduction, or speech enhancement. A flexible sound acquisition and processing means that we can capture the sound with almost arbitrary microphone configurations without constraining the application at the ap- plication side. This means that we can realize and adjust the different applications indepen- dently of the microphone configuration used at the recording side. For example in spatial sound reproduction, where we aim at reproducing the sound such that the listener perceives the same impression as if he ...

Thiergart, Oliver — Friedrich-Alexander-Universitat Erlangen-Nurnberg

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